Rui Carlos Vaqueiro De Castro Alves

Salvado, Baldiri; Karathia, Hiren; Usie Chimenos, Anabel; Vilaprinyo, Ester; Omholt, Stig; Sorribas, Albert; Alves, Rui

Methods for and results from the study of design principles in molecular systems.

MATHEMATICAL BIOSCIENCES 231 3-18. 01/05/2011.

[doi:10.1016/j.mbs.2011.02.005]

Alves, Rui; Sorribas, Albert

Special issue on biological design principles.

MATHEMATICAL BIOSCIENCES 231 1-2. 01/05/2011.

[doi:10.1016/j.mbs.2011.03.009]

Alves, R.; Vilaprinyo, E.; Sorribas, A.

Teaching systems biology.

IET SYSTEMS BIOLOGY 5 131-136. 01/03/2011.

[doi:10.1049/iet-syb.2010.0032]

Karathia, Hiren; Vilaprinyo, Ester; Sorribas, Albert; Alves, Rui

Saccharomyces cerevisiae as a model organism: a comparative study.

PLOS ONE 6 -. 02/02/2011.

[doi:10.1371/journal.pone.0016015]

Sorribas, Albert; Pozo, Carlos; Vilaprinyo, Ester; Guillen-Gosalbez, Gonzalo; Jimenez, Laureano; Alves, Rui

Optimization and evolution in metabolic pathways: global optimization techniques in Generalized Mass Action models.

Journal Of Biotechnology 149 141-153. 01/09/2010.

[doi:10.1016/j.jbiotec.2010.01.026]

Vilaprinyo, Ester; Alves, Rui; Sorribas, Albert

Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes.

Plos Computational Biology 6 -. 12/02/2010.

[doi:10.1371/journal.pcbi.1000674]

Alves, Rui; Vilaprinyo, Ester; Sorribas, Albert; Herrero, Enrique

Evolution based on domain combinations: the case of glutaredoxins.

BMC EVOLUTIONARY BIOLOGY 9 66-66. 25/03/2009.

[doi:10.1186/1471-2148-9-66]

Igoshin, Oleg A.; Alves, Rui; Savageau, Michael A.

Hysteretic and graded responses in bacterial two-component signal transduction

MOLECULAR MICROBIOLOGY 68 1196-1215. 01/06/2008.

[doi:10.1111/j.1365-2958.2008.06221.x]

Alves, Rui; Vilaprinyo, Ester; Sorribas, Albert

Integrating bioinformatics and computational biology: Perspectives and possibilities for in silico network reconstruction in molecular systems biology

CURR BIOINFORM 3 98-129. 01/05/2008.

[doi:10.2174/157489308784340694]

Alves R; Vilaprinyo E; Hernádez-Bermejo B; Sorribas A

Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways.

Biotechnology & Genetic Engineering Reviews 25 1-40. 01/01/2008.

Sorribas, Albert; Hernandez-Bermejo, Benito; Vilaprinyo, Ester; Alves, Rui

Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations.

BIOTECHNOL BIOENG 97 1259-1277. 01/08/2007.

[doi:10.1002/bit.21316]

Alves, Rui; Sorribas, Albert

In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae.

BMC SYSTEMS BIOLOGY 1 10-10. 31/01/2007.

[doi:10.1186/1752-0509-1-10]