Rui Carlos Vaqueiro De Castro Alves

Igoshin, Oleg A.; Alves, Rui; Savageau, Michael A.

Hysteretic and graded responses in bacterial two-component signal transduction

MOLECULAR MICROBIOLOGY 68 1196-1215. 01/06/2008.

[doi:10.1111/j.1365-2958.2008.06221.x]

Alves, Rui; Vilaprinyo, Ester; Sorribas, Albert

Integrating bioinformatics and computational biology: Perspectives and possibilities for in silico network reconstruction in molecular systems biology

CURR BIOINFORM 3 98-129. 01/05/2008.

[doi:10.2174/157489308784340694]

Alves R; Vilaprinyo E; Hernádez-Bermejo B; Sorribas A

Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways.

Biotechnology & Genetic Engineering Reviews 25 1-40. 01/01/2008.

Sorribas, Albert; Hernandez-Bermejo, Benito; Vilaprinyo, Ester; Alves, Rui

Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations.

BIOTECHNOLOGY AND BIOENGINEERING 97 1259-1277. 01/08/2007.

[doi:10.1002/bit.21316]

Alves, Rui; Sorribas, Albert

In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae.

BMC SYSTEMS BIOLOGY 1 10-10. 31/01/2007.

[doi:10.1186/1752-0509-1-10]

Alves, R; Antunes, F; Salvador, A

Tools for kinetic modeling of biochemical networks.

Nature Biotechnology 24 667-672. 01/06/2006.

[doi:10.1038/nbt0606-667]

Vilaprinyo, Ester; Alves, Rui; Sorribas, Albert

Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock.

Bmc Bioinformatics 7 184-184. 03/04/2006.

[doi:10.1186/1471-2105-7-184]

Alves, R; Savageau, MA

Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes

MOLECULAR MICROBIOLOGY 56 1017-1034. 01/05/2005.

[doi:10.1111/j.1365-2958.2005.04566.x]

Alves, R; Herrero, E; SORRIBAS, A

Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism. II. Role of glutaredoxin Grx5.

PROTEINS 57 481-492. 15/11/2004.

[doi:10.1002/prot.20228]

Alves, R; Herrero, E; SORRIBAS, A

Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism: I. The role of the protein pair ferredoxin-ferredoxin reductase (Yah1-Arh1).

PROTEINS 56 354-366. 01/08/2004.

[doi:10.1002/prot.20110]

Vilella, F; Alves, R; Rodriguez-Manzaneque, MT; Belli, G; Swaminathan, S; Sunnerhagen, P; Herrero, E

Evolution and cellular function of monothiol glutaredoxins: involvement in iron-sulphur cluster assembly.

Comparative And Functional Genomics 5 328-341. 01/06/2004.

[doi:10.1002/cfg.406]

Alves, R; Savageau, MA

Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function

MOLECULAR MICROBIOLOGY 48 25-51. 01/04/2003.

[doi:10.1046/j.1365-2958.2003.03344.x]